FDRdb

Data Details
Disease Name	idiopathic pulmonary fibrosis
Tissue	lung
Database	GEO
Data ID	GSE156310
Data Type	expression
Platform	GPL18573
Species	homo sapiens
Sample Number	2
PubMed ID	33859634
Title	Disparate interferon signaling and shared aberrant basaloid cells in single-cell profiling of idiopathic pulmonary fibrosis and systemic sclerosis-associated interstitial lung disease
Data Description	"To reduce batch effects in analyzing multiple samples, all control, IPF, and SSc-ILD samples were combined into 3 objects by disease status using Seurat's IntegrateData function, followed by integration of these 3 objects."
Keyword	pulmonary fibrosis mRNA
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Data Details
Disease Name	idiopathic pulmonary fibrosis
Tissue	lung
Database	GEO
Data ID	GSE156310
Data Type	expression
Platform	GPL18573
Species	homo sapiens
Sample Number	2
PubMed ID	33859634
Title	Disparate interferon signaling and shared aberrant basaloid cells in single-cell profiling of idiopathic pulmonary fibrosis and systemic sclerosis-associated interstitial lung disease
Data Description	"To reduce batch effects in analyzing multiple samples, all control, IPF, and SSc-ILD samples were combined into 3 objects by disease status using Seurat's IntegrateData function, followed by integration of these 3 objects. Following clustering and visualization with uniform manifold approximation and projection (UMAP), cell populations were classified using multiple gene markers in the transcriptome. Doublet cells were manually identified and subsequently removed. To better define individual cell types, the myeloid, lymphoid, epithelial, and stromal populations were separately reclustered. Differential gene expression analysis for IPF versus SSc-ILD cells for each cluster was performed using the Wilcoxon rank-sum statistical test."
Keyword	pulmonary fibrosis rna
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FDRdb: Fibrosis Disease-associated RNAnome database

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